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CMS-XML SDA: WAS plugin Update step doesn't appear to be performing a Save operation
In order to get this to work you need to include a " Synchronize Nodes" step after the "Update Application" step. According to the WebSphere documentation in the case of network deployment setup you need to synchronize nodes after invoking update() and save() to view the changes.
CMS-XML SDA - How to do a clean Deploy
Additionally, the Download Artifacts plugin step has allows the selection of a Sync Mode. The actions of the two choices are:
PDF Serena Deployment Automation Guide
Stateless server-agent communication provides significant benefits to performance, security, availability, and disaster recovery. Because each agent request is self-contained, a transaction consists of independent message which can be synchronized to secondary storage as it occurs. Either endpoint–server or agent can be taken down and brought back up without repercussion (other than lost time).

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